課程名稱 |
植物基因體學 Plant Genomics |
開課學期 |
103-2 |
授課對象 |
生物資源暨農學院 作物科學組 |
授課教師 |
林彥蓉 |
課號 |
Agron5056 |
課程識別碼 |
621 U6450 |
班次 |
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學分 |
3 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期五5,6,7(12:20~15:10) |
上課地點 |
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備註 |
教室:農藝館316。建議先修遺傳學,分子遺傳學,分子生物學或生物資訊學導論與劉力瑜、邢禹依、董致韡合開 限學士班三年級以上 總人數上限:16人 |
Ceiba 課程網頁 |
http://ceiba.ntu.edu.tw/1032Agron5056_ |
課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
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課程概述 |
Genome science has been one of the most blooming sciences in the past decade. The complete genome sequences of the dicot model plant, Arabidopsis, and of the monocot crops such as rice, sorghum and maize are released. In addition, many crops and plants are undergone sequencing. The genomic information provides various research methodologies and speeds up traditional researches. This course will emphasize on genetic mapping, physical mapping, and genome sequencing and annotating to dissect plant genomes. Consequently, this course will introduce the applications of genomics in positional cloning, gene expression, comparative mapping, genetic variation and so on. |
課程目標 |
Organization and Structure of Genomes
Assemblies of Genetic and Physical Maps
Genome Sequencing Projects
Plant Functional Genomics
Bioinformatics-Sequence alignment, comparative genomics
SNPs and Variation
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課程要求 |
待補 |
預期每週課後學習時數 |
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Office Hours |
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指定閱讀 |
待補 |
參考書目 |
Benfey P.N., and Protopapas A.D., “Genomics” Pearson Education, USA, 2005
Cullis C.A. “Plant Genomics and Proteomics”, John Wiley & Son (Asia), USA, 2004
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評量方式 (僅供參考) |
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週次 |
日期 |
單元主題 |
第1週 |
02/27 |
Holliday和平紀念日遇例假日補假 |
第2週 |
03/06 |
Introduction of Plant Genomics; Organization and Structure of Genomes (Lin) |
第3週 |
3/13 |
Establishing a Linkage Map and Physical Map of Genome (Lin)
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第4週 |
3/20 |
Genome Sequencing Methods and Strategies (Lin) |
第5週 |
3/27 |
Midterm I (Lin) |
第6週 |
04/03 |
Holliday兒童節遇例假日補假 |
第7週 |
04/10 |
Sequence Alignment (Liu) |
第8週 |
04/17 |
Global Gene Expression (Liu) |
第9週 |
4/24 |
Bioinformatics: Lab (Liu) |
第10週 |
05/01 |
Next Generation Sequencing (NGS) in Plant Genomics (Tung) |
第11週 |
05/08 |
Genome variations (Tung) |
第12週 |
05/15 |
Comparative Genomics (Tung) |
第13週 |
05/22 |
The Application of NGS data on Plant Genome Studies: Lab (Tung) |
第14週 |
05/29 |
Midterm II (Tung) |
第15週 |
06/05 |
Plant Genome Projects (Hsing) |
第16週 |
06/12 |
Current Plant Genome Researches (Hsing) |
第17週 |
06/19 |
Holliday端午節遇例假日補假 |
第18週 |
06/26 |
Final (Literature Review and Presentation) |
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